Details of SCOP family a.4.5.36

SCOP class : All alpha proteins

SCOP fold : DNA/RNA-binding 3-helical bundle

SCOP superfamily : "Winged helix" DNA-binding domain

SCOP family : DNA-binding protein Mj223

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d1ku9a_

Pfam families related to this family

Z score family code family description
10.109 B-block_TFIIICB-block binding subunit of TFIIIC
9.024 CrpBacterial regulatory proteins, crp family
7.862 DUF1495Winged helix DNA-binding domain (DUF1495)
9.309 DUF2250Uncharacterized protein conserved in archaea (DUF2250)
7.596 DUF2513Hypothetical protein (DUF2513)
7.909 DUF3116Protein of unknown function (DUF3116)
7.832 DUF387Putative transcriptional regulators (Ypuh-like)
8.802 DUF4364Domain of unknown function (DUF4364)
9.643 FURFerric uptake regulator family
9.410 FaeAFaeA-like protein
11.474 Fe_dep_repressIron dependent repressor, N-terminal DNA binding domain
8.141 FeoCFeoC like transcriptional regulator
8.426 Ftsk_gammaFtsk gamma domain
9.356 GntRBacterial regulatory proteins, gntR family
10.216 HTH_1Bacterial regulatory helix-turn-helix protein, lysR family
8.505 HTH_10HTH DNA binding domain
12.323 HTH_11HTH domain
11.803 HTH_12Ribonuclease R winged-helix domain
14.761 HTH_20Helix-turn-helix domain
15.366 HTH_24Winged helix-turn-helix DNA-binding
16.150 HTH_27Winged helix DNA-binding domain
13.620 HTH_34Winged helix DNA-binding domain
10.188 HTH_36Helix-turn-helix domain
8.595 HTH_39Helix-turn-helix domain
8.461 HTH_41Helix-turn-helix domain
9.479 HTH_45Winged helix-turn-helix
16.252 HTH_5Bacterial regulatory protein, arsR family
7.500 HTH_9RNA polymerase III subunit RPC82 helix-turn-helix domain
10.312 HTH_AsnC-typeAsnC-type helix-turn-helix domain
8.975 HTH_CodYCodY helix-turn-helix domain
9.882 HTH_Crp_2Crp-like helix-turn-helix domain
10.352 HTH_DeoRDeoR-like helix-turn-helix domain
13.729 HTH_IclRIclR helix-turn-helix domain
7.561 HTH_MgaM protein trans-acting positive regulator (MGA) HTH domain
8.043 HrcA_DNA-bdgWinged helix-turn-helix transcription repressor, HrcA DNA-binding
11.467 HxlRHxlR-like helix-turn-helix
10.663 LexA_DNA_bindLexA DNA binding domain
19.899 MarRMarR family
19.577 MarR_2MarR family
8.818 PaaXPaaX-like protein
12.177 PadRTranscriptional regulator PadR-like family
11.315 Penicillinase_RPenicillinase repressor
12.029 RP-CReplication protein C N-terminal domain
8.350 RepLFirmicute plasmid replication protein (RepL)
8.377 Rio2_NRio2, N-terminal
10.404 Rrf2Transcriptional regulator
7.569 RuvB_CHolliday junction DNA helicase ruvB C-terminus
8.156 SelB-wing_3Elongation factor SelB, winged helix
8.001 SgrR_NSugar transport-related sRNA regulator N-term
9.899 Sulfolobus_pRNSulfolobus plasmid regulatory protein
10.217 TFIIE_alphaTFIIE alpha subunit
14.886 TrmBSugar-specific transcriptional regulator TrmB