Details of Superfamily a.118.1

Diagram of relationships between the families present in a.118.1 Superfamily.

Click on the figure for a larger image.


SCOP class : All alpha proteins

SCOP fold : alpha-alpha superhelix

SCOP superfamily : ARM repeat



Pfam families present in this Superfamily

ACC_central -- Acetyl-CoA carboxylase, central region (PF08326)

ACR_tran -- AcrB/AcrD/AcrF family (PF00873)

AKAP_110 -- A-kinase anchor protein 110 kDa (AKAP 110) (PF05716)

ALMT -- Aluminium activated malate transporter (PF11744)

APG17 -- Autophagy protein Apg17 (PF04108)

APG9 -- Autophagy protein Apg9 (PF04109)

API5 -- Apoptosis inhibitory protein 5 (API5) (PF05918)

Aconitase_B_N -- Aconitate B N-terminal domain (PF11791)

Adaptin_N -- Adaptin N terminal region (PF01602)

Apc3 -- Anaphase-promoting complex, cyclosome, subunit 3 (PF12895)

Arm -- Armadillo/beta-catenin-like repeat (PF00514)

Arm_2 -- Armadillo-like (PF04826)

Atx10homo_assoc -- Spinocerebellar ataxia type 10 protein domain (PF09759)

Avirulence -- Xanthomonas avirulence protein, Avr/PthA (PF03377)

B56 -- Protein phosphatase 2A regulatory B subunit (B56 family) (PF01603)

Baculo_p48 -- Baculovirus P48 protein (PF04878)

BicD -- Microtubule-associated protein Bicaudal-D (PF09730)

Birna_RdRp -- Birnavirus RNA dependent RNA polymerase (VP1) (PF04197)

Bunya_RdRp -- Bunyavirus RNA dependent RNA polymerase (PF04196)

CAS_CSE1 -- CAS/CSE protein, C-terminus (PF03378)

CCDC142 -- Coiled-coil protein 142 (PF14923)

CDC14 -- Cell division control protein 14, SIN component (PF08045)

CENP-I -- Mis6 (PF07778)

CLASP_N -- CLASP N terminal (PF12348)

COBRA1 -- Cofactor of BRCA1 (COBRA1) (PF06209)

COG6 -- Conserved oligomeric complex COG6 (PF06419)

COG7 -- Golgi complex component 7 (COG7) (PF10191)

COX5A -- Cytochrome c oxidase subunit Va (PF02284)

CRISPR_Cse1 -- CRISPR-associated protein Cse1 (CRISPR_cse1) (PF09481)

CRM1_C -- CRM1 C terminal (PF08767)

Cas_Csd1 -- CRISPR-associated protein (Cas_Csd1) (PF09709)

Cas_Csx8 -- CRISPR-associated protein Csx8 (Cas_Csx8) (PF09657)

Cas_TM1802 -- CRISPR-associated protein TM1802 (cas_TM1802) (PF09484)

Clathrin -- Region in Clathrin and VPS (PF00637)

Clathrin_H_link -- Clathrin-H-link (PF13838)

Clusterin -- Clusterin (PF01093)

Cnd1 -- non-SMC mitotic condensation complex subunit 1 (PF12717)

Cnd3 -- Nuclear condensing complex subunits, C-term domain (PF12719)

Coatomer_E -- Coatomer epsilon subunit (PF04733)

CobN-Mg_chel -- CobN/Magnesium Chelatase (PF02514)

Cobalamin_bind -- Eukaryotic cobalamin-binding protein (PF01122)

Cohesin_load -- Cohesin loading factor (PF10345)

Competence -- Competence protein (PF03772)

Cse1 -- Cse1 (PF08506)

Cullin -- Cullin family (PF00888)

DNA_alkylation -- DNA alkylation repair enzyme (PF08713)

DNA_pol_phi -- DNA polymerase phi (PF04931)

DUF1186 -- Protein of unknown function (DUF1186) (PF06685)

DUF1347 -- Protein of unknown function (DUF1347) (PF07079)

DUF1631 -- Protein of unknown function (DUF1631) (PF07793)

DUF2014 -- Domain of unknown function (DUF2014) (PF09427)

DUF2193 -- Uncharacterized protein conserved in archaea (DUF2193) (PF09959)

DUF2309 -- Uncharacterized protein conserved in bacteria (DUF2309) (PF10070)

DUF2359 -- Uncharacterised conserved protein (DUF2359) (PF10151)

DUF2428 -- Putative death-receptor fusion protein (DUF2428) (PF10350)

DUF2454 -- Protein of unknown function (DUF2454) (PF10521)

DUF247 -- Plant protein of unknown function (PF03140)

DUF2748 -- Protein of unknown function (DUF2748) (PF10871)

DUF3028 -- Protein of unknown function (DUF3028) (PF11229)

DUF3292 -- Protein of unknown function (DUF3292) (PF11696)

DUF3361 -- Domain of unknown function (DUF3361) (PF11841)

DUF3376 -- Protein of unknown function (DUF3376) (PF11856)

DUF3384 -- Domain of unknown function (DUF3384) (PF11864)

DUF3385 -- Domain of unknown function (DUF3385) (PF11865)

DUF3402 -- Domain of unknown function (DUF3402) (PF11882)

DUF3418 -- Domain of unknown function (DUF3418) (PF11898)

DUF3514 -- Protein of unknown function (DUF3514) (PF12027)

DUF3517 -- Domain of unknown function (DUF3517) (PF12030)

DUF3518 -- Domain of unknown function (DUF3518) (PF12031)

DUF3535 -- Domain of unknown function (DUF3535) (PF12054)

DUF3549 -- Protein of unknown function (DUF3549) (PF12069)

DUF3554 -- Domain of unknown function (DUF3554) (PF12074)

DUF3636 -- Protein of unknown function (DUF3636) (PF12331)

DUF3684 -- Protein of unknown function (DUF3684) (PF12449)

DUF3689 -- Protein of unknown function (DUF3689) (PF12463)

DUF3723 -- Protein of unknown function (DUF3723) (PF12520)

DUF3730 -- Protein of unknown function (DUF3730) (PF12530)

DUF3731 -- DNA-K related protein (PF12531)

DUF3808 -- Protein of unknown function (DUF3808) (PF10300)

DUF383 -- Domain of unknown function (DUF383) (PF04063)

DUF4042 -- Domain of unknown function (DUF4042) (PF13251)

DUF4071 -- Domain of unknown function (DUF4071) (PF13281)

DUF445 -- Protein of unknown function (DUF445) (PF04286)

DUF4455 -- Domain of unknown function (DUF4455) (PF14643)

DUF4486 -- Domain of unknown function (DUF4486) (PF14858)

DUF4487 -- Domain of unknown function (DUF4487) (PF14868)

DUF4507 -- Domain of unknown function (DUF4507) (PF14964)

DUF4551 -- Protein of unknown function (DUF4551) (PF15087)

DUF4559 -- Domain of unknown function (DUF4559) (PF15112)

DUF4631 -- Domain of unknown function (DUF4631) (PF15450)

DUF499 -- Protein of unknown function (DUF499) (PF04465)

DUF505 -- Protein of unknown function (DUF505) (PF04458)

DUF629 -- Protein of unknown function (DUF629) (PF04780)

DUF639 -- Plant protein of unknown function (DUF639) (PF04842)

DUF759 -- Borrelia burgdorferi protein of unknown function (DUF759) (PF05537)

DUF773 -- Protein of unknown function (DUF773) (PF05600)

DUF793 -- Protein of unknown function (DUF793) (PF05633)

DUF812 -- Protein of unknown function (DUF812) (PF05667)

DUF908 -- Domain of Unknown Function (DUF908) (PF06012)

DUF913 -- Domain of Unknown Function (DUF913) (PF06025)

Dopey_N -- Dopey, N-terminal (PF04118)

Dpy19 -- Q-cell neuroblast polarisation (PF10034)

Drf_FH3 -- Diaphanous FH3 Domain (PF06367)

Drf_GBD -- Diaphanous GTPase-binding Domain (PF06371)

Dymeclin -- Dyggve-Melchior-Clausen syndrome protein (PF09742)

Dynein_heavy -- Dynein heavy chain and region D6 of dynein motor (PF03028)

E3_UbLigase_R4 -- E3 ubiquitin-protein ligase UBR4 (PF13764)

ERAP1_C -- ERAP1-like C-terminal domain (PF11838)

Ecm29 -- Proteasome stabiliser (PF13001)

Exo70 -- Exo70 exocyst complex subunit (PF03081)

Exonuc_V_gamma -- Exodeoxyribonuclease V, gamma subunit (PF04257)

FAM178 -- Family of unknown function, FAM178 (PF14816)

FANCAA -- Fanconi anemia-associated (PF15146)

FANCF -- Fanconi anemia group F protein (FANCF) (PF11107)

FA_FANCE -- Fanconi Anaemia group E protein FANCE (PF11510)

Fanconi_C -- Fanconi anaemia group C protein (PF02106)

FliG_C -- FliG C-terminal domain (PF01706)

FliG_M -- FliG middle domain (PF14841)

FliG_N -- FliG N-terminal domain (PF14842)

Flu_PB1 -- Influenza RNA-dependent RNA polymerase subunit PB1 (PF00602)

FragX_IP -- Cytoplasmic Fragile-X interacting family (PF05994)

Fungal_trans_2 -- Fungal specific transcription factor domain (PF11951)

GCP5-Mod21 -- gamma-Tubulin ring complex non-core subunit mod21 (PF14609)

GOLGA2L5 -- Putative golgin subfamily A member 2-like protein 5 (PF15070)

Glypican -- Glypican (PF01153)

HEAT -- HEAT repeat (PF02985)

HEAT_2 -- HEAT repeats (PF13646)

HEAT_EZ -- HEAT-like repeat (PF13513)

HEAT_PBS -- PBS lyase HEAT-like repeat (PF03130)

HPS3_C -- Hermansky-Pudlak syndrome 3, C-terminal (PF14763)

Hamartin -- Hamartin protein (PF04388)

HbrB -- HbrB-like (PF08539)

Herpes_IE1 -- Cytomegalovirus IE1 protein (PF07340)

Herpes_U30 -- Herpes virus tegument protein U30 (PF04523)

Herpes_UL21 -- Herpesvirus UL21 (PF03252)

Herpes_UL25 -- Herpesvirus UL25 family (PF01499)

Herpes_UL46 -- Herpesvirus UL46 protein (PF03387)

Herpes_UL47 -- Herpesvirus UL47 protein (PF03362)

Herpes_env -- Herpesvirus putative major envelope glycoprotein (PF01673)

Herpes_ori_bp -- Origin of replication binding protein (PF02399)

Herpes_pp85 -- Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25) (PF04637)

Het-C -- Heterokaryon incompatibility protein Het-C (PF07217)

Hid1 -- High-temperature-induced dauer-formation protein (PF12722)

Hyccin -- Hyccin (PF09790)

IBN_N -- Importin-beta N-terminal domain (PF03810)

IFRD -- Interferon-related developmental regulator (IFRD) (PF05004)

INTS2 -- Integrator complex subunit 2 (PF14750)

INTS5_C -- Integrator complex subunit 5 C-terminus (PF14838)

Innexin -- Innexin (PF00876)

KAP -- Kinesin-associated protein (KAP) (PF05804)

Kinetochor_Ybp2 -- Uncharacterised protein family, YAP/Alf4/glomulin (PF08568)

Ku_PK_bind -- Ku C terminal domain like (PF08785)

LINES_N -- Lines N-terminus (PF14694)

Leuk-A4-hydro_C -- Leukotriene A4 hydrolase, C-terminal (PF09127)

MA3 -- MA3 domain (PF02847)

MMS19_C -- RNAPII transcription regulator C-terminal (PF12460)

MMS19_N -- Dos2-interacting transcription regulator of RNA-Pol-II (PF14500)

MMS22L_C -- S-phase genomic integrity recombination mediator, C-terminal (PF14911)

MMS22L_N -- S-phase genomic integrity recombination mediator, N-terminal (PF14910)

MOR2-PAG1_C -- Cell morphogenesis C-terminal (PF14225)

MOR2-PAG1_N -- Cell morphogenesis N-terminal (PF14222)

MOR2-PAG1_mid -- Cell morphogenesis central region (PF14228)

MRP-S27 -- Mitochondrial 28S ribosomal protein S27 (PF10037)

MSP1b -- Major surface protein 1B (PF03429)

Med12-LCEWAV -- Eukaryotic Mediator 12 subunit domain (PF12145)

Med16 -- Mediator complex subunit 16 (PF11635)

Med24_N -- Mediator complex subunit 24 N-terminal (PF11277)

Med5 -- Mediator complex subunit Med5 (PF08689)

Mei4 -- Meiosis-specific protein Mei4 (PF13971)

Menin -- Menin (PF05053)

Mesothelin -- Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin) (PF06060)

MgtE_N -- MgtE intracellular N domain (PF03448)

Mitofilin -- Mitochondrial inner membrane protein (PF09731)

Mo25 -- Mo25-like (PF08569)

Mononeg_RNA_pol -- Mononegavirales RNA dependent RNA polymerase (PF00946)

Mus7 -- Mus7/MMS22 family (PF09462)

NARP1 -- NMDA receptor-regulated protein 1 (PF12569)

NUC194 -- NUC194 domain (PF08163)

NatB_MDM20 -- N-acetyltransferase B complex (NatB) non catalytic subunit (PF09797)

Nckap1 -- Membrane-associated apoptosis protein (PF09735)

Neurochondrin -- Neurochondrin (PF05536)

Nic96 -- Nup93/Nic96 (PF04097)

Nipped-B_C -- Sister chromatid cohesion C-terminus (PF12830)

Noc2 -- Noc2p family (PF03715)

NolX -- NolX protein (PF05819)

Nop14 -- Nop14-like family (PF04147)

Not1 -- CCR4-Not complex component, Not1 (PF04054)

Npa1 -- Ribosome 60S biogenesis N-terminal (PF11707)

Nro1 -- Nuclear pore complex subunit Nro1 (PF12753)

Nse5 -- DNA repair proteins Nse5 and Nse6 (PF08691)

Nucleo_P87 -- Nucleopolyhedrovirus capsid protein P87 (PF07267)

Nucleopor_Nup85 -- Nup85 Nucleoporin (PF07575)

Nucleoporin_C -- Non-repetitive/WGA-negative nucleoporin C-terminal (PF03177)

Nup188 -- Nucleoporin subcomplex protein binding to Pom34 (PF10487)

Nup84_Nup100 -- Nuclear pore protein 84 / 107 (PF04121)

Nup96 -- Nuclear protein 96 (PF12110)

P16-Arc -- ARP2/3 complex 16 kDa subunit (p16-Arc) (PF04699)

PAT1 -- Topoisomerase II-associated protein PAT1 (PF09770)

PCI_Csn8 -- COP9 signalosome, subunit CSN8 (PF10075)

PHAT -- PHAT (PF09246)

PI3K_1B_p101 -- Phosphoinositide 3-kinase gamma adapter protein p101 subunit (PF10486)

PI3Ka -- Phosphoinositide 3-kinase family, accessory domain (PIK domain) (PF00613)

PRTP -- Herpesvirus processing and transport protein (PF01366)

PUF -- Pumilio-family RNA binding repeat (PF00806)

PUL -- PUL domain (PF08324)

Paf67 -- RNA polymerase I-associated factor PAF67 (PF10255)

Peroxin-3 -- Peroxin-3 (PF04882)

Pes-10 -- Pes-10 (PF07149)

Pox_E2-like -- Poxviridae protein (PF04497)

Pox_E6 -- Pox virus E6 protein (PF04656)

Pox_P4A -- Poxvirus P4A protein (PF03395)

Proteasom_PSMB -- Proteasome non-ATPase 26S subunit (PF10508)

RAB3GAP2_C -- Rab3 GTPase-activating protein regulatory subunit C-terminus (PF14656)

RAI16-like -- Retinoic acid induced 16-like protein (PF10257)

RICTOR_M -- Rapamycin-insensitive companion of mTOR, middle domain (PF14666)

RICTOR_N -- Rapamycin-insensitive companion of mTOR, N-term (PF14664)

RICTOR_V -- Rapamycin-insensitive companion of mTOR, domain 5 (PF14668)

RINT1_TIP1 -- RINT-1 / TIP-1 family (PF04437)

RIX1 -- rRNA processing/ribosome biogenesis (PF08167)

RRN3 -- RNA polymerase I specific transcription initiation factor RRN3 (PF05327)

RTX -- RTX N-terminal domain (PF02382)

RanGAP1_C -- RanGAP1 C-terminal domain (PF07834)

Rav1p_C -- RAVE protein 1 C terminal (PF12234)

Rcd1 -- Cell differentiation family, Rcd1-like (PF04078)

Ric8 -- Guanine nucleotide exchange factor synembryn (PF10165)

Rif1_N -- Rap1-interacting factor 1 N terminal (PF12231)

Rod_C -- Rough deal protein C-terminal region (PF10493)

Rota_VP2 -- Rotavirus VP2 protein (PF05087)

SAC3_GANP -- SAC3/GANP/Nin1/mts3/eIF-3 p25 family (PF03399)

SAPS -- SIT4 phosphatase-associated protein (PF04499)

SCP-1 -- Synaptonemal complex protein 1 (SCP-1) (PF05483)

SEN1_N -- SEN1 N terminal (PF12726)

SNAP -- Soluble NSF attachment protein, SNAP (PF14938)

SOG2 -- RAM signalling pathway protein (PF10428)

SPG48 -- AP-5 complex subunit, vesicle trafficking (PF14764)

SPO22 -- Meiosis protein SPO22/ZIP4 like (PF08631)

ST7 -- ST7 protein (PF04184)

Sec10 -- Exocyst complex component Sec10 (PF07393)

Sec39 -- Secretory pathway protein Sec39 (PF08314)

Sec6 -- Exocyst complex component Sec6 (PF06046)

Sel1 -- Sel1 repeat (PF08238)

Serendipity_A -- Serendipity locus alpha protein (SRY-A) (PF05482)

Sfi1 -- Sfi1 spindle body protein (PF08457)

SpecificRecomb -- Site-specific recombinase (PF10136)

Strumpellin -- Hereditary spastic paraplegia protein strumpellin (PF10266)

TAF1_subA -- TAF RNA Polymerase I subunit A (PF14929)

TFCD_C -- Tubulin folding cofactor D C terminal (PF12612)

TH1 -- TH1 protein (PF04858)

TIMELESS -- Timeless protein (PF04821)

TIMELESS_C -- Timeless protein C terminal region (PF05029)

TPR_11 -- TPR repeat (PF13414)

TPR_15 -- Tetratricopeptide repeat (PF13429)

TPR_2 -- Tetratricopeptide repeat (PF07719)

TPR_8 -- Tetratricopeptide repeat (PF13181)

TTKRSYEDQ -- Predicted coiled-coil domain-containing protein (PF10212)

Tcf25 -- Transcriptional repressor TCF25 (PF04910)

Tcp11 -- T-complex protein 11 (PF05794)

Tfb2 -- Transcription factor Tfb2 (PF03849)

Tht1 -- Tht1-like nuclear fusion protein (PF04163)

Translin -- Translin family (PF01997)

Treslin_N -- Treslin N-terminus (PF15292)

Tuberin -- Tuberin (PF03542)

UNC-79 -- Cation-channel complex subunit UNC-79 (PF14776)

UNC45-central -- Myosin-binding striated muscle assembly central (PF11701)

Ufd2P_core -- Ubiquitin elongating factor core (PF10408)

Urb2 -- Urb2/Npa2 family (PF10441)

Uso1_p115_head -- Uso1 / p115 like vesicle tethering protein, head region (PF04869)

V-ATPase_H_C -- V-ATPase subunit H (PF11698)

V-ATPase_H_N -- V-ATPase subunit H (PF03224)

VKG_Carbox -- Vitamin K-dependent gamma-carboxylase (PF05090)

Vac14_Fab1_bd -- Vacuolar 14 Fab1-binding region (PF12755)

Viral_DNA_bp -- ssDNA binding protein (PF00747)

Viral_Hsp90 -- Viral heat shock protein Hsp90 homologue (PF03225)

Virul_Fac -- Putative bacterial virulence factor (PF10139)

Vps16_C -- Vps16, C-terminal region (PF04840)

Vps35 -- Vacuolar protein sorting-associated protein 35 (PF03635)

Vps52 -- Vps52 / Sac2 family (PF04129)

WAPL -- Wings apart-like protein regulation of heterochromatin (PF07814)

WASH-7_N -- WASH complex subunit 7, N-terminal (PF14745)

Xpo1 -- Exportin 1-like protein (PF08389)

YfiO -- Outer membrane lipoprotein (PF13525)

eIF-3c_N -- Eukaryotic translation initiation factor 3 subunit 8 N-terminus (PF05470)

efThoc1 -- THO complex subunit 1 transcription elongation factor (PF11957)

mRNA_stabil -- mRNA stabilisation (PF13929)

mit_SMPDase -- Mitochondrial-associated sphingomyelin phosphodiesterase (PF14724)

tRNA_synt_2f -- Glycyl-tRNA synthetase beta subunit (PF02092)