Details of Superfamily a.4.1

Diagram of relationships between the families present in a.4.1 Superfamily.

Click on the figure for a larger image.


SCOP class : All alpha proteins

SCOP fold : DNA/RNA-binding 3-helical bundle

SCOP superfamily : Homeodomain-like



Pfam families present in this Superfamily

Bac_DnaA_C -- Bacterial dnaA protein helix-turn-helix (PF08299)

CENP-B_N -- CENP-B N-terminal DNA-binding domain (PF04218)

DUF433 -- Protein of unknown function (DUF433) (PF04255)

GerE -- Bacterial regulatory proteins, luxR family (PF00196)

HTH_23 -- Homeodomain-like domain (PF13384)

HTH_28 -- Helix-turn-helix domain (PF13518)

HTH_29 -- Winged helix-turn helix (PF13551)

HTH_32 -- Homeodomain-like domain (PF13565)

HTH_7 -- Helix-turn-helix domain of resolvase (PF02796)

HTH_8 -- Bacterial regulatory protein, Fis family (PF02954)

HTH_Tnp_1 -- Transposase (PF01527)

HTH_Tnp_1_2 -- Helix-turn-helix of insertion element transposase (PF13022)

HTH_Tnp_4 -- Helix-turn-helix of DDE superfamily endonuclease (PF13613)

HTH_Tnp_IS630 -- Transposase (PF01710)

HTH_Tnp_ISL3 -- Helix-turn-helix domain of transposase family ISL3 (PF13542)

HTH_Tnp_Mu_2 -- Mu DNA binding, I gamma subdomain (PF09039)

HTH_Tnp_Tc5 -- Tc5 transposase DNA-binding domain (PF03221)

HTH_psq -- helix-turn-helix, Psq domain (PF05225)

Homeobox -- Homeobox domain (PF00046)

Homeobox_KN -- Homeobox KN domain (PF05920)

Homez -- Homeodomain leucine-zipper encoding, Homez (PF11569)

Integrase_Zn -- Integrase Zinc binding domain (PF02022)

KorB -- KorB domain (PF08535)

LZ_Tnp_IS481 -- leucine-zipper of insertion element IS481 (PF13011)

Mor -- Mor transcription activator family (PF08765)

Myb_DNA-bind_2 -- Rap1 Myb domain (PF08914)

Myb_DNA-bind_4 -- Myb/SANT-like DNA-binding domain (PF13837)

Myb_DNA-bind_5 -- Myb/SANT-like DNA-binding domain (PF13873)

Myb_DNA-bind_6 -- Myb-like DNA-binding domain (PF13921)

Myb_DNA-binding -- Myb-like DNA-binding domain (PF00249)

PAX -- 'Paired box' domain (PF00292)

RNA_pol_N -- RNA polymerases N / 8 kDa subunit (PF01194)

Rap1-DNA-bind -- Rap1, DNA-binding (PF09197)

SLIDE -- SLIDE (PF09111)

SWIRM -- SWIRM domain (PF04433)

Sigma70_r3 -- Sigma-70 region 3 (PF04539)

Sigma70_r4 -- Sigma-70, region 4 (PF04545)

Sigma70_r4_2 -- Sigma-70, region 4 (PF08281)

Terminase_5 -- Putative ATPase subunit of terminase (gpP-like) (PF06056)

TetR_N -- Bacterial regulatory proteins, tetR family (PF00440)

Trp_repressor -- Trp repressor protein (PF01371)

UPF0122 -- Putative helix-turn-helix protein, YlxM / p13 like (PF04297)