Details of Superfamily c.55.3

Diagram of relationships between the families present in c.55.3 Superfamily.

Click on the figure for a larger image.


SCOP class : Alpha and beta proteins (a/b)

SCOP fold : Ribonuclease H-like motif

SCOP superfamily : Ribonuclease H-like



Pfam families present in this Superfamily

CAF1 -- CAF1 family ribonuclease (PF04857)

DDE_2 -- Bacteriophage Mu transposase (PF02914)

DDE_3 -- DDE superfamily endonuclease (PF13358)

DDE_5 -- DDE superfamily endonuclease (PF13546)

DDE_Tnp_1 -- Transposase DDE domain (PF01609)

DDE_Tnp_1_4 -- Transposase DDE domain group 1 (PF13701)

DDE_Tnp_1_7 -- Transposase IS4 (PF13843)

DDE_Tnp_2 -- Archaeal putative transposase ISC1217 (PF04693)

DDE_Tnp_IS1595 -- ISXO2-like transposase domain (PF12762)

DDE_Tnp_IS240 -- DDE domain (PF13610)

DNA_pol_A_exo1 -- 3'-5' exonuclease (PF01612)

DNA_pol_B_exo2 -- Predicted 3'-5' exonuclease related to the exonuclease domain of PolB (PF10108)

DUF3882 -- Lactococcus phage M3 protein (PF07066)

DUF429 -- Protein of unknown function (DUF429) (PF04250)

DUF4413 -- Domain of unknown function (DUF4413) (PF14372)

DUF659 -- Protein of unknown function (DUF 659) (PF04937)

Dimer_Tnp_Tn5 -- Transposase Tn5 dimerisation domain (PF02281)

Dimer_Tnp_hAT -- hAT family C-terminal dimerisation region (PF05699)

NurA -- NurA domain (PF09376)

Piwi -- Piwi domain (PF02171)

Pox_A22 -- Poxvirus A22 protein (PF04848)

RNase_H -- RNase H (PF00075)

RNase_H_2 -- RNase_H superfamily (PF13482)

RNase_T -- Exonuclease (PF00929)

RVT_3 -- Reverse transcriptase-like (PF13456)

RuvC -- Crossover junction endodeoxyribonuclease RuvC (PF02075)

Tnp_DNA_bind -- Transposase DNA-binding (PF14706)

UPF0081 -- Uncharacterised protein family (UPF0081) (PF03652)

Ydc2-catalyt -- Mitochondrial resolvase Ydc2 / RNA splicing MRS1 (PF09159)

rve -- Integrase core domain (PF00665)

rve_3 -- Integrase core domain (PF13683)