Details of Superfamily c.55.3
Diagram of relationships between the families present in c.55.3 Superfamily.
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SCOP class
: Alpha and beta proteins (a/b)
SCOP fold
: Ribonuclease H-like motif
SCOP superfamily
: Ribonuclease H-like
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c.55.3.1
: Ribonuclease H
c.55.3.10
: PIWI domain
c.55.3.11
: TM1739-like
c.55.3.12
: Hermes transposase-like
c.55.3.13
: Tex RuvX-like domain-like
c.55.3.14
: Prp8 beta-finger domain-like
c.55.3.2
: Retroviral integrase, catalytic domain
c.55.3.3
: mu transposase, core domain
c.55.3.4
: Transposase inhibitor (Tn5 transposase)
c.55.3.5
: DnaQ-like 3'-5' exonuclease
c.55.3.6
: RuvC resolvase
c.55.3.7
: Mitochondrial resolvase ydc2 catalytic domain
c.55.3.8
: Putative Holliday junction resolvase RuvX
c.55.3.9
: CAF1-like ribonuclease
Pfam families present in this Superfamily
CAF1 -- CAF1 family ribonuclease (PF04857)
DDE_2 -- Bacteriophage Mu transposase (PF02914)
DDE_3 -- DDE superfamily endonuclease (PF13358)
DDE_5 -- DDE superfamily endonuclease (PF13546)
DDE_Tnp_1 -- Transposase DDE domain (PF01609)
DDE_Tnp_1_4 -- Transposase DDE domain group 1 (PF13701)
DDE_Tnp_1_7 -- Transposase IS4 (PF13843)
DDE_Tnp_2 -- Archaeal putative transposase ISC1217 (PF04693)
DDE_Tnp_IS1595 -- ISXO2-like transposase domain (PF12762)
DDE_Tnp_IS240 -- DDE domain (PF13610)
DNA_pol_A_exo1 -- 3'-5' exonuclease (PF01612)
DNA_pol_B_exo2 -- Predicted 3'-5' exonuclease related to the exonuclease domain of PolB (PF10108)
DUF3882 -- Lactococcus phage M3 protein (PF07066)
DUF429 -- Protein of unknown function (DUF429) (PF04250)
DUF4413 -- Domain of unknown function (DUF4413) (PF14372)
DUF659 -- Protein of unknown function (DUF 659) (PF04937)
Dimer_Tnp_Tn5 -- Transposase Tn5 dimerisation domain (PF02281)
Dimer_Tnp_hAT -- hAT family C-terminal dimerisation region (PF05699)
NurA -- NurA domain (PF09376)
Piwi -- Piwi domain (PF02171)
Pox_A22 -- Poxvirus A22 protein (PF04848)
RNase_H -- RNase H (PF00075)
RNase_H_2 -- RNase_H superfamily (PF13482)
RNase_T -- Exonuclease (PF00929)
RVT_3 -- Reverse transcriptase-like (PF13456)
RuvC -- Crossover junction endodeoxyribonuclease RuvC (PF02075)
Tnp_DNA_bind -- Transposase DNA-binding (PF14706)
UPF0081 -- Uncharacterised protein family (UPF0081) (PF03652)
Ydc2-catalyt -- Mitochondrial resolvase Ydc2 / RNA splicing MRS1 (PF09159)
rve -- Integrase core domain (PF00665)
rve_3 -- Integrase core domain (PF13683)
